PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004505582.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 375aa    MW: 41150.4 Da    PI: 7.0633
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004505582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.8e-10425527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     Cr+f+r G C+yG+rC++ H++
  XP_004505582.1  4 VCRNFQR-GSCSYGERCRYLHVQ 25
                    7******.*************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-4125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.38E-5326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-7325IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-8425IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MKDVCRNFQR GSCSYGERCR YLHVQQQPQR KSNNVNGFGG QPNSQQHPNT NPFGFGSASS  60
ASQQQQKTNP FGFGNQNTNQ LNGKPNQFQP FENKWSRSSS KPQNGTPRQS DNHSQTVNHK  120
CTDPEVCKRQ IAEDFEQEKP LWTLTCYGHC KGAPCDIVGD ISYEELRAAA YEDAKNGMNL  180
QSIVEKERNI LKSKLVEFEK LLSEPYKMPL NSSIDIQKHQ SNGANANAFS LATQNNGPLA  240
VSSFSQLGAS MNTGFERPAA APLMATPVQP SSFGNGGNFF TSNTENLFGS GILGGQSTPF  300
STPAELTMFP GSTSQPQQPS FAFNNTSSTT MLPTASDVLN TSQVENVSGD VSIWLKEKWN  360
PGEIPEEAPP DRFVR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1433491e-138BT143349.1 Medicago truncatula clone JCVI-FLMt-18J14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505582.10.0PREDICTED: zinc finger CCCH domain-containing protein 16
TrEMBLG7JSU20.0G7JSU2_MEDTR; CCCH-type zinc finger protein, putative
STRINGGLYMA12G01905.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46002333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.16e-78C3H family protein